| content | complex |
| Name | Type | Use | Default | Fixed | Annotation |
| id | xs:string | required |
| documentation |
| Conditions that have been established to measure effects which are induced in cells in response to a perturbation, together with data that have been acquired in these measurements in order to address the biological question this project was designed for. |
<xs:annotation>
<xs:documentation>Conditions that have been established to measure effects which are induced in cells in response to a perturbation, together with data that have been acquired in these measurements in order to address the biological question this project was designed for.
</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="source" type="sourceType">
<xs:annotation>
<xs:documentation>Contact details of researcher/person/laboratory/institution in charge of the project</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="projectDescription" type="openCvType">
<xs:annotation>
<xs:documentation>Short description of biological process that is addressed and description of measured effect.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="application">
<xs:annotation>
<xs:documentation>Description of the specific application of this project within a larger context.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="title" type="xs:string">
<xs:annotation>
<xs:documentation>Application title, e. g. as taken from a publication</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="abstract" type="xs:string">
<xs:annotation>
<xs:documentation>Application abstract, e. g. as taken from a publication</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="bibref">
<xs:annotation>
<xs:documentation>Bibliographic reference for the data generated during the project.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:choice>
<xs:element name="xref" type="xrefType">
<xs:annotation>
<xs:documentation>Cross reference for the data source. Example: Entry in a database of databases. </xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="attributeList" type="attributeListType">
<xs:annotation>
<xs:documentation>Further description of the source.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:choice>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="materialList">
<xs:annotation>
<xs:documentation>Description of the materials that are utilized in the project.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="array" type="arrayType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>arrays (reaction vessels) that are used during the project</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="cellCultureMedium" type="reagentType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Media used for the cell-culture(s) during the project.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="supplement" type="reagentType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>supplements used within the cell culture media.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="cells" type="cellsType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Cells used during the assay. Usually coming from a continuous cell-culture.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="perturbatorList">
<xs:annotation>
<xs:documentation>Description of material/condition(s) that is used in the project to perturb the cells </xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="perturbator" type="perturbatorType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Description of one perturbator, e. g. a cDNA, a temperature shift, etc.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="instrument">
<xs:annotation>
<xs:documentation>Description of the data acquisition station. Detailed descriptions of such instruments and their settings could be part of spezialized documents.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="names" type="namesType">
<xs:annotation>
<xs:documentation>Instrument name</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="instrumentType" type="openCvType">
<xs:annotation>
<xs:documentation>Instrument type, e. g. FACS, Plate Reader, etc. </xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="source" type="sourceType">
<xs:annotation>
<xs:documentation>Contact details of the instrument manufacturer.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="settings">
<xs:annotation>
<xs:documentation>Reference to the instrument-sttings</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="protocolRef" type="fuge:FuGE.Common.Description.URIType"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="protocolList">
<xs:annotation>
<xs:documentation>List with all protocols used in the project, e.g. for cell-culture, treatments, perturbations, the actual experiment, etc.
</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="protocol" type="fuge:FuGE.Common.Protocol.ProtocolType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Description of one protocol.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="CellAssayExperiment">
<xs:annotation>
<xs:documentation>The actual experiment part decribing all performed steps like treatments, perturbation(s) and data acquisition.
</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="CellAssayApplication" type="CellAssayApplicationType"/>
<xs:element name="InitialCellCultureApplication" type="InitialCellCultureApplicationType" maxOccurs="unbounded"/>
<xs:element name="TreatmentApplication" type="TreatmentApplicationType" maxOccurs="unbounded"/>
<xs:element name="PerturbationApplication" type="PerturbationApplicationType" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="PostTreatmentApplication" type="PostTreatmentApplicationType" minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="DataAcquisitionApplication" type="DataAcquisitionApplicationType" minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="id" type="xs:string" use="required"/>
</xs:complexType>
</xs:element>
